Fish sample collection

Occurrence
Latest version published by GBIF France on Mar 3, 2023 GBIF France
Publication date:
3 March 2023
Published by:
GBIF France
License:
CC-BY 4.0

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 323,752 records in French (20 MB) - Update frequency: annually
Metadata as an EML file download in English (13 KB)
Metadata as an RTF file download in English (12 KB)

Description

For many years now, within the framework of ORE DiaPFC, SOERE OLA or the OFB-INRAE-Institut Agro-UPPA Cluster, various INRAE units (U3E, UMR ECOBIOP and UMR CARRTEL) and OFB (DRAS ) take samples from many aquatic specimens. These samples, usually scales or fins, are then used by the scientific community to carry out various analyzes and research. Labeled Biological Resource Center (CRB) by the GIS IBISA, Colisa is part of the BRC4Env environment pillar of the RARE infrastructure. Our catalog references these different hard tissue samples and offers a module allowing you to perform queries on our database and select the types of data likely to interest you. You can then export this data.

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 323,752 records.

6 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

Occurrence (core)
323752
MeasurementOrFacts 
1295008
MaterialSample 
323752
Permit 
323752
Preparation 
323752
Preservation 
323752
ResourceRelationship 
323752

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Marchand F, Azam D, Lange F, Josset Q, Jeannot N, Goulon C, Guéraud F (2023): Fish sample collection. v1.4. GBIF France. Dataset/Occurrence. https://ipt-uat.gbif.fr/resource?r=colisa&v=1.4

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is GBIF France. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 305f13cb-b5a6-4f4d-a338-f3af7a13fcc5.  GBIF France publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF France.

Keywords

Occurrence;ichthyological sample;Genetic Resource

Contacts

Frédéric Marchand
  • Metadata Provider
  • Originator
  • Point Of Contact
  • Researcher
INRAE U3E, Pôle OFB-INRAE-Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement
  • 65 rue de St Brieuc, CS 84215
Rennes
  • +33 223485786
Didier Azam
  • Originator
  • Researcher
INRAE U3E, Pôle OFB-INRAE-Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement
  • 65 rue de St Brieuc, CS 84215
Rennes
  • +33 223485786
Frédéric Lange
  • Originator
  • Researcher
Université de Pau et des Pays de l’Adour, e2s-UPPA, INRAE, OFB, Agrocampus-Ouest, ECOBIOP, Pôle pour la gestion des migrateurs amphihalins dans leur environnement, Saint-Pée-sur-Nivelle, France
  • Aquapôle - Ibarron
St-Pée-sur-Nivelle
FR
  • +33559515975
Quentin Josset
  • Originator
  • Researcher
OFB, Pôle OFB-INRAE-Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement
  • 92 Chaussée de Picardie
76260 Eu
FR
  • +33276375078
Nicolas Jeannot
  • Originator
  • Researcher
INRAE U3E, Pôle OFB-INRAE-Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement
  • Moulin des Princes
56620 Pont-Scorff
FR
  • +33297325429
Chloé Goulon
  • Originator
  • Researcher
INRAE USMB
  • 75 bis avenue de Corzent
74203 THONON LES BAINS
FR
  • +33450267800
François Guéraud
  • Originator
  • Researcher
Université de Pau et des Pays de l’Adour, e2s-UPPA, INRAE, OFB, Agrocampus-Ouest, ECOBIOP, Pôle pour la gestion des migrateurs amphihalins dans leur environnement, Saint-Pée-sur-Nivelle, France
  • Aquapôle - Ibarron
St-Pée-sur-Nivelle
Agnès Starck
  • Researcher
INRAE U3E, Pôle OFB-INRAE-Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement
  • 65 rue de St Brieuc, CS 84215
35042 Rennes
  • +33 223485786
Nadine Renault
  • Programmer
  • Researcher
INRAE U3E, Pôle OFB-INRAE-Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement
  • 65 rue de St Brieuc, CS 84215
35042 Rennes
FR

Geographic Coverage

The samples come mainly from France (metropolitan and Kerguelen Islands)

Bounding Coordinates South West [-90, -180], North East [90, 180]

Taxonomic Coverage

Model species, preferentially used by the scientific community to study biological mechanisms whose results can be extended to other less accessible or less documented species based on the conservation of functions and genes during evolution.

Species Salmo salar (Atlantic Salmon), Salmo trutta (Sea trout), Onchorynchus mykiss (Rainbow Trout), Cyprinus carpio (Common carp, European carp, King carp, Mirror carp), Sparus auratus (Gilthead seabream)

Temporal Coverage

Start Date / End Date 1958-12-18 / 2023-02-18

Sampling Methods

The samples come from scientific monitoring and from amateur and professional fishing.

Study Extent French metropole and Kerguelen island
Quality Control The Colisa Biological Resource Centre is ISO 90001 certified

Method step description:

  1. - Samples of scales or other tissues are taken from fish during fish surveys. The fish are returned to the water. Otoliths are collected from fish found dead or caught by amateur fishermen. - Age is verified from scale reading according to standard methods described by Baglinière and Le Louarn (1987) and Richard and Baglinière (1990).

Additional Metadata

Alternative Identifiers 305f13cb-b5a6-4f4d-a338-f3af7a13fcc5
https://ipt-uat.gbif.fr/resource?r=colisa